Cluster: ShaoY_2019_ERR3406195_bin.12_CGC26
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_00847
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_23 | 24941 | 26719 | - | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_24 | 26933 | 28336 | + | 3.A.1.1.18 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_25 | 28434 | 29348 | + | 3.A.1.1.20 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_26 | 29350 | 30204 | + | 3.A.1.1.18 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_27 | 30234 | 32399 | + | GH95 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_28 | 32396 | 33544 | + | GH112 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_23
Type: TC
Location: 24941 - 26719 (-)
Type: TC
Location: 24941 - 26719 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_24
Type: TC
Location: 26933 - 28336 (+)
Type: TC
Location: 26933 - 28336 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_25
Type: TC
Location: 28434 - 29348 (+)
Type: TC
Location: 28434 - 29348 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_26
Type: TC
Location: 29350 - 30204 (+)
Type: TC
Location: 29350 - 30204 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_27
Type: CAZyme
Location: 30234 - 32399 (+)
Type: CAZyme
Location: 30234 - 32399 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_28
Type: CAZyme
Location: 32396 - 33544 (+)
Type: CAZyme
Location: 32396 - 33544 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_8293_24 | vegan > omnivore | 1.14518 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_26 | vegan > omnivore | 1.01919 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_27 | vegan > omnivore | 1.00900 | 0.01218 |