Cluster: ShaoY_2019_ERR3406195_bin.12_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_16 | 17137 | 18363 | + | 3.A.1.1.16 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_17 | 18381 | 19271 | + | 3.A.1.1.44 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_18 | 19275 | 20129 | + | 3.A.1.1.6 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8293 | ShaoY_2019_ERR3406195_bin.12_k141_8293_19 | 20155 | 21882 | + | CBM34 | GH13_20 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_16
Type: TC
Location: 17137 - 18363 (+)
Type: TC
Location: 17137 - 18363 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_17
Type: TC
Location: 18381 - 19271 (+)
Type: TC
Location: 18381 - 19271 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_18
Type: TC
Location: 19275 - 20129 (+)
Type: TC
Location: 19275 - 20129 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8293_19
Type: CAZyme
Location: 20155 - 21882 (+)
Type: CAZyme
Location: 20155 - 21882 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_8293_16 | vegan > omnivore | 1.62194 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_16 | vegetarian > omnivore | 1.09893 | 0.00455 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_17 | vegan > omnivore | 1.39479 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_17 | vegetarian > omnivore | 1.33300 | 0.00455 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_18 | vegan > omnivore | 1.67426 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_18 | vegetarian > omnivore | 1.45749 | 0.00455 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_19 | vegan > omnivore | 1.19957 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_8293_19 | vegetarian > omnivore | 1.09223 | 0.00455 |