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Cluster: ShaoY_2019_ERR3406195_bin.12_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_7870 ShaoY_2019_ERR3406195_bin.12_k141_7870_23 29451 30467 + GT113
TC ShaoY_2019_ERR3406195_bin.12_k141_7870 ShaoY_2019_ERR3406195_bin.12_k141_7870_24 30480 31946 + 2.A.66.2.16
pfam ShaoY_2019_ERR3406195_bin.12_k141_7870 ShaoY_2019_ERR3406195_bin.12_k141_7870_25 32014 32898 - DUF362
TC ShaoY_2019_ERR3406195_bin.12_k141_7870 ShaoY_2019_ERR3406195_bin.12_k141_7870_26 33009 33749 - 3.A.1.23.7
pfam ShaoY_2019_ERR3406195_bin.12_k141_7870 ShaoY_2019_ERR3406195_bin.12_k141_7870_27 33764 34561 - CbiQ
TC ShaoY_2019_ERR3406195_bin.12_k141_7870 ShaoY_2019_ERR3406195_bin.12_k141_7870_28 34536 35546 - 3.A.1.23.5
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7870_23
Type: CAZyme
Location: 29451 - 30467 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7870_24
Type: TC
Location: 30480 - 31946 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7870_25
Type: pfam
Location: 32014 - 32898 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7870_26
Type: TC
Location: 33009 - 33749 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7870_27
Type: pfam
Location: 33764 - 34561 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7870_28
Type: TC
Location: 34536 - 35546 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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