Cluster: ShaoY_2019_ERR3406195_bin.12_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_00091
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_78 | 94813 | 96351 | - | 2.A.66.1.40 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_79 | 96348 | 97085 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_80 | 97097 | 99502 | - | Glyco_trans_1_4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_81 | 99505 | 100608 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_82 | 100605 | 101702 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_83 | 101699 | 102904 | - | GT4 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_7855 | ShaoY_2019_ERR3406195_bin.12_k141_7855_84 | 102915 | 104321 | - | 9.B.18.1.2 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_78
Type: TC
Location: 94813 - 96351 (-)
Type: TC
Location: 94813 - 96351 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_79
Type:
Location: 96348 - 97085 (-)
Type:
Location: 96348 - 97085 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_80
Type: pfam
Location: 97097 - 99502 (-)
Type: pfam
Location: 97097 - 99502 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_81
Type: CAZyme
Location: 99505 - 100608 (-)
Type: CAZyme
Location: 99505 - 100608 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_82
Type: CAZyme
Location: 100605 - 101702 (-)
Type: CAZyme
Location: 100605 - 101702 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_83
Type: CAZyme
Location: 101699 - 102904 (-)
Type: CAZyme
Location: 101699 - 102904 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_7855_84
Type: TC
Location: 102915 - 104321 (-)
Type: TC
Location: 102915 - 104321 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.