Cluster: ShaoY_2019_ERR3406195_bin.12_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_04434
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_121 | 137697 | 137954 | - | 2.A.19.5.1 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_122 | 138422 | 138856 | + | MarR |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_123 | 138869 | 139279 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_124 | 139289 | 140278 | + | GT2 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_121
Type: TC
Location: 137697 - 137954 (-)
Type: TC
Location: 137697 - 137954 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_122
Type: TF
Location: 138422 - 138856 (+)
Type: TF
Location: 138422 - 138856 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_123
Type:
Location: 138869 - 139279 (+)
Type:
Location: 138869 - 139279 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_124
Type: CAZyme
Location: 139289 - 140278 (+)
Type: CAZyme
Location: 139289 - 140278 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.