Cluster: ShaoY_2019_ERR3406195_bin.12_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_00764
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_35 | 37783 | 39258 | - | 2.A.50.2.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_36 | 39271 | 40383 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_37 | 40423 | 43449 | - | GT39 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_38 | 43446 | 44843 | - | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | tRNA-synt_1g | CysS_C |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_39 | 44919 | 46856 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_6204 | ShaoY_2019_ERR3406195_bin.12_k141_6204_40 | 46856 | 47431 | - | 4.F.1.1.7 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_35
Type: TC
Location: 37783 - 39258 (-)
Type: TC
Location: 37783 - 39258 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_36
Type:
Location: 39271 - 40383 (-)
Type:
Location: 39271 - 40383 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_37
Type: CAZyme
Location: 40423 - 43449 (-)
Type: CAZyme
Location: 40423 - 43449 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_38
Type: pfam
Location: 43446 - 44843 (-)
Type: pfam
Location: 43446 - 44843 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_39
Type:
Location: 44919 - 46856 (-)
Type:
Location: 44919 - 46856 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_6204_40
Type: TC
Location: 46856 - 47431 (-)
Type: TC
Location: 46856 - 47431 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.