Cluster: ShaoY_2019_ERR3406195_bin.12_CGC16
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_00312
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_97 | 109066 | 109773 | - | 3.A.1.4.10 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_98 | 109776 | 110540 | - | 3.A.1.4.10 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_99 | 110544 | 111422 | - | 3.A.1.4.10 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_100 | 111439 | 112311 | - | 3.A.1.4.10 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_101 | 112426 | 113616 | - | 3.A.1.4.10 |
| STP | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_102 | 114071 | 115297 | - | Pyr_redox_2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_103 | 115606 | 116895 | - | GH136 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_104 | 116846 | 117310 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_105 | 117307 | 118113 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_106 | 118106 | 118987 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_107 | 119109 | 120476 | - | 3.A.1.1.4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_108 | 120550 | 122709 | - | GH112 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_97
Type: TC
Location: 109066 - 109773 (-)
Type: TC
Location: 109066 - 109773 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_98
Type: TC
Location: 109776 - 110540 (-)
Type: TC
Location: 109776 - 110540 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_99
Type: TC
Location: 110544 - 111422 (-)
Type: TC
Location: 110544 - 111422 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_100
Type: TC
Location: 111439 - 112311 (-)
Type: TC
Location: 111439 - 112311 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_101
Type: TC
Location: 112426 - 113616 (-)
Type: TC
Location: 112426 - 113616 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_102
Type: STP
Location: 114071 - 115297 (-)
Type: STP
Location: 114071 - 115297 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_103
Type: CAZyme
Location: 115606 - 116895 (-)
Type: CAZyme
Location: 115606 - 116895 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_104
Type:
Location: 116846 - 117310 (-)
Type:
Location: 116846 - 117310 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_105
Type: TC
Location: 117307 - 118113 (-)
Type: TC
Location: 117307 - 118113 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_106
Type: TC
Location: 118106 - 118987 (-)
Type: TC
Location: 118106 - 118987 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_107
Type: TC
Location: 119109 - 120476 (-)
Type: TC
Location: 119109 - 120476 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_108
Type: CAZyme
Location: 120550 - 122709 (-)
Type: CAZyme
Location: 120550 - 122709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_5178_97 | vegetarian > vegan | 1.43992 | 0.00701 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_98 | vegetarian > vegan | 1.12282 | 0.01390 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_99 | vegan > omnivore | 1.77045 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_99 | vegetarian > omnivore | 3.41015 | 0.00455 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_99 | vegetarian > vegan | 1.63970 | 0.00867 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_100 | vegan > omnivore | 1.07798 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_100 | vegetarian > omnivore | 2.46862 | 0.00455 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_100 | vegetarian > vegan | 1.39064 | 0.00754 |
| ShaoY_2019_ERR3406195_bin.12_k141_5178_101 | vegetarian > vegan | 1.57150 | 0.00867 |