Cluster: ShaoY_2019_ERR3406195_bin.12_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_56 | 58910 | 60397 | - | GH77 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_57 | 60448 | 61452 | - | LacI |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_58 | 61486 | 62334 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_59 | 62334 | 63185 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_5178 | ShaoY_2019_ERR3406195_bin.12_k141_5178_60 | 63368 | 64735 | - | 3.A.1.1.45 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_56
Type: CAZyme
Location: 58910 - 60397 (-)
Type: CAZyme
Location: 58910 - 60397 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_57
Type: TF
Location: 60448 - 61452 (-)
Type: TF
Location: 60448 - 61452 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_58
Type: TC
Location: 61486 - 62334 (-)
Type: TC
Location: 61486 - 62334 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_59
Type: TC
Location: 62334 - 63185 (-)
Type: TC
Location: 62334 - 63185 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_5178_60
Type: TC
Location: 63368 - 64735 (-)
Type: TC
Location: 63368 - 64735 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.