Cluster: ShaoY_2019_ERR3406195_bin.12_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_01316
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_17 | 19020 | 19967 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_18 | 19960 | 20754 | + | 3.A.1.34.1 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_19 | 20940 | 22634 | + | Lipase_GDSL_2 | OSK | Flg_new_2 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_20 | 22657 | 23412 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_21 | 23485 | 25374 | + | 3.A.1.121.4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_22 | 25476 | 26246 | + | GT111 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_23 | 26239 | 27141 | + | GT2 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_24 | 27151 | 28863 | + | Hydrolase | Hydrolase_like |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4315 | ShaoY_2019_ERR3406195_bin.12_k141_4315_25 | 28887 | 29897 | + | GT2 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_17
Type: TC
Location: 19020 - 19967 (+)
Type: TC
Location: 19020 - 19967 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_18
Type: TC
Location: 19960 - 20754 (+)
Type: TC
Location: 19960 - 20754 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_19
Type: pfam
Location: 20940 - 22634 (+)
Type: pfam
Location: 20940 - 22634 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_20
Type: pfam
Location: 22657 - 23412 (+)
Type: pfam
Location: 22657 - 23412 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_21
Type: TC
Location: 23485 - 25374 (+)
Type: TC
Location: 23485 - 25374 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_22
Type: CAZyme
Location: 25476 - 26246 (+)
Type: CAZyme
Location: 25476 - 26246 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_23
Type: CAZyme
Location: 26239 - 27141 (+)
Type: CAZyme
Location: 26239 - 27141 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_24
Type: pfam
Location: 27151 - 28863 (+)
Type: pfam
Location: 27151 - 28863 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4315_25
Type: CAZyme
Location: 28887 - 29897 (+)
Type: CAZyme
Location: 28887 - 29897 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.