Cluster: ShaoY_2019_ERR3406195_bin.12_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_173 | 186469 | 188400 | - | GH13_14 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_174 | 188524 | 189387 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_175 | 189515 | 191776 | + | GT35 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_176 | 191864 | 192589 | - | Ala_racemase_N |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_177 | 192586 | 193143 | - | DUF436 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_178 | 193322 | 195133 | - | 3.A.1.135.6 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_179 | 195135 | 197336 | - | 3.A.1.135.6 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_180 | 197320 | 197835 | - | MarR |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_181 | 197965 | 199455 | - | GH28 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_182 | 199632 | 199859 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_183 | 199955 | 202054 | + | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_184 | 202146 | 204170 | - | GH42 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_185 | 204237 | 205136 | - | 3.A.1.1.27 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_186 | 205133 | 206569 | - | 3.A.1.1.27 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_173
Type: CAZyme
Location: 186469 - 188400 (-)
Type: CAZyme
Location: 186469 - 188400 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_174
Type: TF
Location: 188524 - 189387 (-)
Type: TF
Location: 188524 - 189387 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_175
Type: CAZyme
Location: 189515 - 191776 (+)
Type: CAZyme
Location: 189515 - 191776 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_176
Type: pfam
Location: 191864 - 192589 (-)
Type: pfam
Location: 191864 - 192589 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_177
Type: pfam
Location: 192586 - 193143 (-)
Type: pfam
Location: 192586 - 193143 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_178
Type: TC
Location: 193322 - 195133 (-)
Type: TC
Location: 193322 - 195133 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_179
Type: TC
Location: 195135 - 197336 (-)
Type: TC
Location: 195135 - 197336 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_180
Type: TF
Location: 197320 - 197835 (-)
Type: TF
Location: 197320 - 197835 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_181
Type: CAZyme
Location: 197965 - 199455 (-)
Type: CAZyme
Location: 197965 - 199455 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_182
Type:
Location: 199632 - 199859 (+)
Type:
Location: 199632 - 199859 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_183
Type: pfam
Location: 199955 - 202054 (+)
Type: pfam
Location: 199955 - 202054 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_184
Type: CAZyme
Location: 202146 - 204170 (-)
Type: CAZyme
Location: 202146 - 204170 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_185
Type: TC
Location: 204237 - 205136 (-)
Type: TC
Location: 204237 - 205136 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_186
Type: TC
Location: 205133 - 206569 (-)
Type: TC
Location: 205133 - 206569 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.