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Cluster: ShaoY_2019_ERR3406195_bin.12_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406195_bin.12_k141_1083 ShaoY_2019_ERR3406195_bin.12_k141_1083_2 1277 2308 + 3.A.1.132.4
TC ShaoY_2019_ERR3406195_bin.12_k141_1083 ShaoY_2019_ERR3406195_bin.12_k141_1083_3 2292 3155 + 3.A.1.132.1
pfam ShaoY_2019_ERR3406195_bin.12_k141_1083 ShaoY_2019_ERR3406195_bin.12_k141_1083_4 3169 4593 + ABC_transp_aux
pfam ShaoY_2019_ERR3406195_bin.12_k141_1083 ShaoY_2019_ERR3406195_bin.12_k141_1083_5 4606 5622 + DUF4340 | DUF4340
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_1083 ShaoY_2019_ERR3406195_bin.12_k141_1083_6 5873 7033 + GH3
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_1083 ShaoY_2019_ERR3406195_bin.12_k141_1083_7 7026 8078 + GT4
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_1083_2
Type: TC
Location: 1277 - 2308 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_1083_3
Type: TC
Location: 2292 - 3155 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_1083_4
Type: pfam
Location: 3169 - 4593 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_1083_5
Type: pfam
Location: 4606 - 5622 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_1083_6
Type: CAZyme
Location: 5873 - 7033 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_1083_7
Type: CAZyme
Location: 7026 - 8078 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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