Cluster: ShaoY_2019_ERR3406085_bin.8_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406085_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406085_bin.8_k141_6897 | ShaoY_2019_ERR3406085_bin.8_k141_6897_7 | 5585 | 7264 | + | 3.A.1.120.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406085_bin.8_k141_6897 | ShaoY_2019_ERR3406085_bin.8_k141_6897_8 | 7389 | 8555 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406085_bin.8_k141_6897 | ShaoY_2019_ERR3406085_bin.8_k141_6897_9 | 8633 | 9634 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_6897 | ShaoY_2019_ERR3406085_bin.8_k141_6897_10 | 9832 | 10881 | - | GT2 |
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_6897_7
Type: TC
Location: 5585 - 7264 (+)
Type: TC
Location: 5585 - 7264 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_6897_8
Type:
Location: 7389 - 8555 (-)
Type:
Location: 7389 - 8555 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_6897_9
Type:
Location: 8633 - 9634 (-)
Type:
Location: 8633 - 9634 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_6897_10
Type: CAZyme
Location: 9832 - 10881 (-)
Type: CAZyme
Location: 9832 - 10881 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406085_bin.8_k141_6897_7 | vegan > omnivore | 1.16133 | 0.00455 |