Cluster: ShaoY_2019_ERR3406085_bin.8_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406085_bin.8
- CGC Family ID: CGCFAM_00191
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_48 | 57665 | 58108 | + | 4.A.6.1.16 |
| pfam | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_49 | 58108 | 58392 | + | YajC |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_50 | 58480 | 58962 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_51 | 59061 | 59858 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_52 | 59848 | 60942 | + | 4.A.6.1.4 |
| TF | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_53 | 61110 | 61841 | + | GntR |
| STP | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_54 | 62034 | 63197 | + | SIS |
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_55 | 63468 | 64628 | + | CE9 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_56 | 64739 | 65365 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_57 | 65685 | 67115 | - | GH1 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_1460 | ShaoY_2019_ERR3406085_bin.8_k141_1460_58 | 67245 | 69131 | - | 4.A.3.1.1 |
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_48
Type: TC
Location: 57665 - 58108 (+)
Type: TC
Location: 57665 - 58108 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_49
Type: pfam
Location: 58108 - 58392 (+)
Type: pfam
Location: 58108 - 58392 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_50
Type: TC
Location: 58480 - 58962 (+)
Type: TC
Location: 58480 - 58962 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_51
Type: TC
Location: 59061 - 59858 (+)
Type: TC
Location: 59061 - 59858 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_52
Type: TC
Location: 59848 - 60942 (+)
Type: TC
Location: 59848 - 60942 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_53
Type: TF
Location: 61110 - 61841 (+)
Type: TF
Location: 61110 - 61841 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_54
Type: STP
Location: 62034 - 63197 (+)
Type: STP
Location: 62034 - 63197 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_55
Type: CAZyme
Location: 63468 - 64628 (+)
Type: CAZyme
Location: 63468 - 64628 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_56
Type:
Location: 64739 - 65365 (+)
Type:
Location: 64739 - 65365 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_57
Type: CAZyme
Location: 65685 - 67115 (-)
Type: CAZyme
Location: 65685 - 67115 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_1460_58
Type: TC
Location: 67245 - 69131 (-)
Type: TC
Location: 67245 - 69131 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.