Cluster: ShaoY_2019_ERR3406085_bin.8_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: ShaoY_2019_ERR3406085_bin.8
- CGC Family ID: CGCFAM_00010
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_4 | 3112 | 3759 | - | 2.A.53.3.9 |
| pfam | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_5 | 4125 | 4811 | + | SAICAR_synt |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_6 | 5647 | 5892 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_7 | 6081 | 7271 | - | 3.A.1.1.26 |
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_8 | 7324 | 9603 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_9 | 9603 | 11198 | - | GH77 |
| TF | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_10 | 11279 | 12295 | - | LacI |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_11 | 12316 | 13155 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_12 | 13155 | 13997 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_35194 | ShaoY_2019_ERR3406085_bin.8_k141_35194_13 | 14130 | 15470 | - | 3.A.1.1.45 |
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_4
Type: TC
Location: 3112 - 3759 (-)
Type: TC
Location: 3112 - 3759 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_5
Type: pfam
Location: 4125 - 4811 (+)
Type: pfam
Location: 4125 - 4811 (+)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_6
Type:
Location: 5647 - 5892 (-)
Type:
Location: 5647 - 5892 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_7
Type: TC
Location: 6081 - 7271 (-)
Type: TC
Location: 6081 - 7271 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_8
Type: CAZyme
Location: 7324 - 9603 (-)
Type: CAZyme
Location: 7324 - 9603 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_9
Type: CAZyme
Location: 9603 - 11198 (-)
Type: CAZyme
Location: 9603 - 11198 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_10
Type: TF
Location: 11279 - 12295 (-)
Type: TF
Location: 11279 - 12295 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_11
Type: TC
Location: 12316 - 13155 (-)
Type: TC
Location: 12316 - 13155 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_12
Type: TC
Location: 13155 - 13997 (-)
Type: TC
Location: 13155 - 13997 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_35194_13
Type: TC
Location: 14130 - 15470 (-)
Type: TC
Location: 14130 - 15470 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406085_bin.8_k141_35194_5 | vegetarian > vegan | 1.16799 | 0.00364 |