Cluster: ShaoY_2019_ERR3406085_bin.8_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406085_bin.8
- CGC Family ID: CGCFAM_08030
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_49 | 55508 | 56896 | - | GH4 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_50 | 57051 | 58715 | - | 4.A.1.1.13 |
| pfam | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_51 | 58715 | 59608 | - | PRD | PRD | CAT_RBD |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_52 | 59636 | 60190 | - | 4.A.1.1.9 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_53 | 60778 | 61413 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_54 | 61604 | 63061 | - | 9.A.40.2.1 |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_55 | 63213 | 64037 | - | 1.C.113.1.10 |
| TF | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_56 | 64178 | 64915 | - | LytTR |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_57 | 65086 | 66636 | - | 9.B.33.1.1 |
| peptidase | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_58 | 66774 | 68051 | - | M38.UNW |
| TC | ShaoY_2019_ERR3406085_bin.8_k141_26535 | ShaoY_2019_ERR3406085_bin.8_k141_26535_59 | 68296 | 69741 | - | 2.A.3.5.1 |
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_49
Type: CAZyme
Location: 55508 - 56896 (-)
Type: CAZyme
Location: 55508 - 56896 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_50
Type: TC
Location: 57051 - 58715 (-)
Type: TC
Location: 57051 - 58715 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_51
Type: pfam
Location: 58715 - 59608 (-)
Type: pfam
Location: 58715 - 59608 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_52
Type: TC
Location: 59636 - 60190 (-)
Type: TC
Location: 59636 - 60190 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_53
Type:
Location: 60778 - 61413 (-)
Type:
Location: 60778 - 61413 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_54
Type: TC
Location: 61604 - 63061 (-)
Type: TC
Location: 61604 - 63061 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_55
Type: TC
Location: 63213 - 64037 (-)
Type: TC
Location: 63213 - 64037 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_56
Type: TF
Location: 64178 - 64915 (-)
Type: TF
Location: 64178 - 64915 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_57
Type: TC
Location: 65086 - 66636 (-)
Type: TC
Location: 65086 - 66636 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_58
Type: peptidase
Location: 66774 - 68051 (-)
Type: peptidase
Location: 66774 - 68051 (-)
Gene ID: ShaoY_2019_ERR3406085_bin.8_k141_26535_59
Type: TC
Location: 68296 - 69741 (-)
Type: TC
Location: 68296 - 69741 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.