Cluster: ShaoY_2019_ERR3406052_bin.4_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406052_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_228 | 265678 | 268005 | - | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_229 | 268129 | 268350 | - | 9.A.8.1.6 |
| STP | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_230 | 268390 | 268632 | - | FeoA |
| STP | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_231 | 268869 | 269117 | - | PTS-HPr |
| TC | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_232 | 269319 | 270782 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_233 | 270936 | 271391 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406052_bin.4_k141_9609 | ShaoY_2019_ERR3406052_bin.4_k141_9609_234 | 271395 | 274403 | - | GH2 |
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_228
Type: TC
Location: 265678 - 268005 (-)
Type: TC
Location: 265678 - 268005 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_229
Type: TC
Location: 268129 - 268350 (-)
Type: TC
Location: 268129 - 268350 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_230
Type: STP
Location: 268390 - 268632 (-)
Type: STP
Location: 268390 - 268632 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_231
Type: STP
Location: 268869 - 269117 (-)
Type: STP
Location: 268869 - 269117 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_232
Type: TC
Location: 269319 - 270782 (-)
Type: TC
Location: 269319 - 270782 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_233
Type:
Location: 270936 - 271391 (-)
Type:
Location: 270936 - 271391 (-)
Gene ID: ShaoY_2019_ERR3406052_bin.4_k141_9609_234
Type: CAZyme
Location: 271395 - 274403 (-)
Type: CAZyme
Location: 271395 - 274403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.