Cluster: ShaoY_2019_ERR3405992_bin.8_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_4870 | ShaoY_2019_ERR3405992_bin.8_k141_4870_1 | 1 | 1545 | + | GH2 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_4870 | ShaoY_2019_ERR3405992_bin.8_k141_4870_2 | 1536 | 2381 | + | AP_endonuc_2 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_4870 | ShaoY_2019_ERR3405992_bin.8_k141_4870_3 | 2402 | 4198 | + | GH43_28 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4870 | ShaoY_2019_ERR3405992_bin.8_k141_4870_4 | 4311 | 5792 | - | 3.A.1.121.3 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4870_1
Type: CAZyme
Location: 1 - 1545 (+)
Type: CAZyme
Location: 1 - 1545 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4870_2
Type: pfam
Location: 1536 - 2381 (+)
Type: pfam
Location: 1536 - 2381 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4870_3
Type: CAZyme
Location: 2402 - 4198 (+)
Type: CAZyme
Location: 2402 - 4198 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4870_4
Type: TC
Location: 4311 - 5792 (-)
Type: TC
Location: 4311 - 5792 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.