Cluster: ShaoY_2019_ERR3405992_bin.8_CGC43
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23934 | ShaoY_2019_ERR3405992_bin.8_k141_23934_1 | 2 | 580 | - | 3.A.1.122.2 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_23934 | ShaoY_2019_ERR3405992_bin.8_k141_23934_2 | 770 | 1573 | - | MerR |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23934 | ShaoY_2019_ERR3405992_bin.8_k141_23934_3 | 1672 | 2346 | + | 2.A.115.1.2 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_23934 | ShaoY_2019_ERR3405992_bin.8_k141_23934_4 | 2586 | 4031 | - | GH32 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23934 | ShaoY_2019_ERR3405992_bin.8_k141_23934_5 | 4042 | 5670 | - | 4.A.1.2.9 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23934_1
Type: TC
Location: 2 - 580 (-)
Type: TC
Location: 2 - 580 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23934_2
Type: TF
Location: 770 - 1573 (-)
Type: TF
Location: 770 - 1573 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23934_3
Type: TC
Location: 1672 - 2346 (+)
Type: TC
Location: 1672 - 2346 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23934_4
Type: CAZyme
Location: 2586 - 4031 (-)
Type: CAZyme
Location: 2586 - 4031 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23934_5
Type: TC
Location: 4042 - 5670 (-)
Type: TC
Location: 4042 - 5670 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.