Cluster: ShaoY_2019_ERR3405992_bin.8_CGC37
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_10 | 8742 | 10082 | - | 2.A.66.1.26 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_11 | 10388 | 10927 | + | LacI |
| STP | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_12 | 10905 | 11288 | + | Peripla_BP_3 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_13 | 11541 | 12272 | + | 4.A.1.2.11 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_14 | 12307 | 13059 | + | 4.A.1.2.5 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_15 | 13093 | 13332 | + | Apiosidase |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_16 | 13393 | 14376 | + | GH140 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_17 | 14390 | 15796 | + | GH1 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_20193 | ShaoY_2019_ERR3405992_bin.8_k141_20193_18 | 15951 | 16511 | - | 2.A.107.1.2 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_10
Type: TC
Location: 8742 - 10082 (-)
Type: TC
Location: 8742 - 10082 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_11
Type: TF
Location: 10388 - 10927 (+)
Type: TF
Location: 10388 - 10927 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_12
Type: STP
Location: 10905 - 11288 (+)
Type: STP
Location: 10905 - 11288 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_13
Type: TC
Location: 11541 - 12272 (+)
Type: TC
Location: 11541 - 12272 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_14
Type: TC
Location: 12307 - 13059 (+)
Type: TC
Location: 12307 - 13059 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_15
Type: pfam
Location: 13093 - 13332 (+)
Type: pfam
Location: 13093 - 13332 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_16
Type: CAZyme
Location: 13393 - 14376 (+)
Type: CAZyme
Location: 13393 - 14376 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_17
Type: CAZyme
Location: 14390 - 15796 (+)
Type: CAZyme
Location: 14390 - 15796 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_20193_18
Type: TC
Location: 15951 - 16511 (-)
Type: TC
Location: 15951 - 16511 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.