Cluster: ShaoY_2019_ERR3405992_bin.8_CGC30
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_7 | 4622 | 5416 | - | CE1 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_8 | 5439 | 6251 | - | DUF34_NIF3 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_9 | 6280 | 7635 | - | 2.A.2.3.3 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_10 | 7709 | 8938 | - | Lipase_GDSL | Lipase_GDSL_2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_11 | 9137 | 9307 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_12 | 9529 | 10566 | + | 8.A.5.1.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_13 | 10652 | 11185 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_16120 | ShaoY_2019_ERR3405992_bin.8_k141_16120_14 | 11392 | 13197 | + | GH13_9 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_7
Type: CAZyme
Location: 4622 - 5416 (-)
Type: CAZyme
Location: 4622 - 5416 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_8
Type: pfam
Location: 5439 - 6251 (-)
Type: pfam
Location: 5439 - 6251 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_9
Type: TC
Location: 6280 - 7635 (-)
Type: TC
Location: 6280 - 7635 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_10
Type: pfam
Location: 7709 - 8938 (-)
Type: pfam
Location: 7709 - 8938 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_11
Type:
Location: 9137 - 9307 (-)
Type:
Location: 9137 - 9307 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_12
Type: TC
Location: 9529 - 10566 (+)
Type: TC
Location: 9529 - 10566 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_13
Type:
Location: 10652 - 11185 (-)
Type:
Location: 10652 - 11185 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_16120_14
Type: CAZyme
Location: 11392 - 13197 (+)
Type: CAZyme
Location: 11392 - 13197 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.