Cluster: ShaoY_2019_ERR3405992_bin.8_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_2 | 508 | 2709 | - | GH3 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_3 | 2815 | 4197 | - | 2.A.2.3.3 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_4 | 4362 | 6965 | - | GH106 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_5 | 7424 | 9817 | - | GH39 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_6 | 9932 | 11557 | - | CBM91 | GH43_12 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_7 | 11734 | 12876 | - | ABC2_membrane_3 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_8 | 12863 | 14011 | - | ABC2_membrane_3 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_9 | 14023 | 14952 | - | 3.A.1.105.9 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_10 | 15141 | 16280 | + | HATPase_c | HisKA_3 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_11 | 16258 | 16917 | + | GerE |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_12 | 17080 | 19191 | + | GH13_11 |
| peptidase | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_13 | 19202 | 20977 | + | S41.UNA |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_14 | 21527 | 22723 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2291 | ShaoY_2019_ERR3405992_bin.8_k141_2291_15 | 22901 | 24694 | - | 1.A.33.1.4 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_2
Type: CAZyme
Location: 508 - 2709 (-)
Type: CAZyme
Location: 508 - 2709 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_3
Type: TC
Location: 2815 - 4197 (-)
Type: TC
Location: 2815 - 4197 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_4
Type: CAZyme
Location: 4362 - 6965 (-)
Type: CAZyme
Location: 4362 - 6965 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_5
Type: CAZyme
Location: 7424 - 9817 (-)
Type: CAZyme
Location: 7424 - 9817 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_6
Type: CAZyme
Location: 9932 - 11557 (-)
Type: CAZyme
Location: 9932 - 11557 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_7
Type: pfam
Location: 11734 - 12876 (-)
Type: pfam
Location: 11734 - 12876 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_8
Type: pfam
Location: 12863 - 14011 (-)
Type: pfam
Location: 12863 - 14011 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_9
Type: TC
Location: 14023 - 14952 (-)
Type: TC
Location: 14023 - 14952 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_10
Type: pfam
Location: 15141 - 16280 (+)
Type: pfam
Location: 15141 - 16280 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_11
Type: TF
Location: 16258 - 16917 (+)
Type: TF
Location: 16258 - 16917 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_12
Type: CAZyme
Location: 17080 - 19191 (+)
Type: CAZyme
Location: 17080 - 19191 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_13
Type: peptidase
Location: 19202 - 20977 (+)
Type: peptidase
Location: 19202 - 20977 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_14
Type: pfam
Location: 21527 - 22723 (-)
Type: pfam
Location: 21527 - 22723 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2291_15
Type: TC
Location: 22901 - 24694 (-)
Type: TC
Location: 22901 - 24694 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.