Cluster: ShaoY_2019_ERR3405992_bin.8_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_1 | 1 | 1404 | - | GH13_4 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_2 | 1724 | 3907 | - | GH36 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_3 | 3953 | 4795 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_4 | 4795 | 5667 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_5 | 5686 | 6969 | - | 3.A.1.1.28 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_1
Type: CAZyme
Location: 1 - 1404 (-)
Type: CAZyme
Location: 1 - 1404 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_2
Type: CAZyme
Location: 1724 - 3907 (-)
Type: CAZyme
Location: 1724 - 3907 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_3
Type: TC
Location: 3953 - 4795 (-)
Type: TC
Location: 3953 - 4795 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_4
Type: TC
Location: 4795 - 5667 (-)
Type: TC
Location: 4795 - 5667 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_5
Type: TC
Location: 5686 - 6969 (-)
Type: TC
Location: 5686 - 6969 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.