Cluster: ShaoY_2019_ERR3405992_bin.8_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_14024 | ShaoY_2019_ERR3405992_bin.8_k141_14024_18 | 16352 | 18826 | - | GT35 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_14024 | ShaoY_2019_ERR3405992_bin.8_k141_14024_19 | 18831 | 21986 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_14024 | ShaoY_2019_ERR3405992_bin.8_k141_14024_20 | 22997 | 26002 | + | UvrD_C | UvrD_C_2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_14024 | ShaoY_2019_ERR3405992_bin.8_k141_14024_21 | 26073 | 27956 | - | 3.A.3.6.10 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14024_18
Type: CAZyme
Location: 16352 - 18826 (-)
Type: CAZyme
Location: 16352 - 18826 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14024_19
Type: pfam
Location: 18831 - 21986 (-)
Type: pfam
Location: 18831 - 21986 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14024_20
Type: pfam
Location: 22997 - 26002 (+)
Type: pfam
Location: 22997 - 26002 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14024_21
Type: TC
Location: 26073 - 27956 (-)
Type: TC
Location: 26073 - 27956 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.