Cluster: ShaoY_2019_ERR3405992_bin.8_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_10908
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2089 | ShaoY_2019_ERR3405992_bin.8_k141_2089_13 | 10107 | 11510 | + | GH13_20 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_2089 | ShaoY_2019_ERR3405992_bin.8_k141_2089_14 | 11603 | 12109 | - | Flavin_Reduct |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_2089 | ShaoY_2019_ERR3405992_bin.8_k141_2089_15 | 12123 | 13346 | - | tRNA-synt_1b | S4 | SYY_C-terminal |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2089 | ShaoY_2019_ERR3405992_bin.8_k141_2089_16 | 13872 | 15158 | - | 4.A.1.1.7 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2089_13
Type: CAZyme
Location: 10107 - 11510 (+)
Type: CAZyme
Location: 10107 - 11510 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2089_14
Type: pfam
Location: 11603 - 12109 (-)
Type: pfam
Location: 11603 - 12109 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2089_15
Type: pfam
Location: 12123 - 13346 (-)
Type: pfam
Location: 12123 - 13346 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2089_16
Type: TC
Location: 13872 - 15158 (-)
Type: TC
Location: 13872 - 15158 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.