Cluster: ShaoY_2019_ERR3405992_bin.8_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_11522 | ShaoY_2019_ERR3405992_bin.8_k141_11522_3 | 4518 | 6443 | + | CBM48 | GH13_9 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_11522 | ShaoY_2019_ERR3405992_bin.8_k141_11522_4 | 6902 | 9001 | + | 3.A.10.1.13 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_11522 | ShaoY_2019_ERR3405992_bin.8_k141_11522_5 | 9065 | 9319 | + | SpoIIID |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_11522 | ShaoY_2019_ERR3405992_bin.8_k141_11522_6 | 9549 | 11225 | + | SLFN_AlbA_2 | HATPase_c_4 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_11522 | ShaoY_2019_ERR3405992_bin.8_k141_11522_7 | 11763 | 12884 | + | 2.A.45.2.6 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_11522_3
Type: CAZyme
Location: 4518 - 6443 (+)
Type: CAZyme
Location: 4518 - 6443 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_11522_4
Type: TC
Location: 6902 - 9001 (+)
Type: TC
Location: 6902 - 9001 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_11522_5
Type: pfam
Location: 9065 - 9319 (+)
Type: pfam
Location: 9065 - 9319 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_11522_6
Type: pfam
Location: 9549 - 11225 (+)
Type: pfam
Location: 9549 - 11225 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_11522_7
Type: TC
Location: 11763 - 12884 (+)
Type: TC
Location: 11763 - 12884 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.