Cluster: ShaoY_2019_ERR3405992_bin.8_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_06092
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_8940 | ShaoY_2019_ERR3405992_bin.8_k141_8940_15 | 13847 | 15019 | + | 2.A.39.1.3 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_8940 | ShaoY_2019_ERR3405992_bin.8_k141_8940_16 | 15227 | 16129 | + | HTH_3 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_8940 | ShaoY_2019_ERR3405992_bin.8_k141_8940_17 | 16138 | 17055 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_8940 | ShaoY_2019_ERR3405992_bin.8_k141_8940_18 | 17210 | 18901 | + | GH13_31 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_8940_15
Type: TC
Location: 13847 - 15019 (+)
Type: TC
Location: 13847 - 15019 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_8940_16
Type: TF
Location: 15227 - 16129 (+)
Type: TF
Location: 15227 - 16129 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_8940_17
Type: TF
Location: 16138 - 17055 (-)
Type: TF
Location: 16138 - 17055 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_8940_18
Type: CAZyme
Location: 17210 - 18901 (+)
Type: CAZyme
Location: 17210 - 18901 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.