Cluster: ShaoY_2019_ERR3405990_bin.18_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405990_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_1 | 3 | 1010 | - | GH94 |
| TF | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_2 | 1418 | 2425 | + | LacI |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_3 | 2530 | 3918 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_4 | 4037 | 5014 | + | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_5 | 5011 | 5880 | + | 3.A.1.1.48 |
| pfam | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_6 | 5983 | 6846 | - | Shikimate_DH | NAD_binding_2 | F420_oxidored | NAD_binding_11 |
| TC | ShaoY_2019_ERR3405990_bin.18_k141_5398 | ShaoY_2019_ERR3405990_bin.18_k141_5398_7 | 6843 | 7841 | - | 2.A.7.7.2 |
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_1
Type: CAZyme
Location: 3 - 1010 (-)
Type: CAZyme
Location: 3 - 1010 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_2
Type: TF
Location: 1418 - 2425 (+)
Type: TF
Location: 1418 - 2425 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_3
Type:
Location: 2530 - 3918 (+)
Type:
Location: 2530 - 3918 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_4
Type: TC
Location: 4037 - 5014 (+)
Type: TC
Location: 4037 - 5014 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_5
Type: TC
Location: 5011 - 5880 (+)
Type: TC
Location: 5011 - 5880 (+)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_6
Type: pfam
Location: 5983 - 6846 (-)
Type: pfam
Location: 5983 - 6846 (-)
Gene ID: ShaoY_2019_ERR3405990_bin.18_k141_5398_7
Type: TC
Location: 6843 - 7841 (-)
Type: TC
Location: 6843 - 7841 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.