Cluster: ShaoY_2019_ERR3405931_bin.18_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- CGC Family ID: CGCFAM_03030
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_340 | 352157 | 353716 | - | CBM91 | GH43_10 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_341 | 353786 | 354931 | - | GH8 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_342 | 354957 | 355886 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_343 | 355900 | 356859 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_344 | 356957 | 358684 | - | 3.A.1.1.29 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_345 | 358864 | 360441 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_346 | 360435 | 362297 | - | 8.A.59.2.1 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_347 | 362652 | 363704 | + | GH5_37 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_348 | 363906 | 365846 | - | GH120 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_340
Type: CAZyme
Location: 352157 - 353716 (-)
Type: CAZyme
Location: 352157 - 353716 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_341
Type: CAZyme
Location: 353786 - 354931 (-)
Type: CAZyme
Location: 353786 - 354931 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_342
Type: TC
Location: 354957 - 355886 (-)
Type: TC
Location: 354957 - 355886 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_343
Type: TC
Location: 355900 - 356859 (-)
Type: TC
Location: 355900 - 356859 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_344
Type: TC
Location: 356957 - 358684 (-)
Type: TC
Location: 356957 - 358684 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_345
Type: TF
Location: 358864 - 360441 (-)
Type: TF
Location: 358864 - 360441 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_346
Type: TC
Location: 360435 - 362297 (-)
Type: TC
Location: 360435 - 362297 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_347
Type: CAZyme
Location: 362652 - 363704 (+)
Type: CAZyme
Location: 362652 - 363704 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_348
Type: CAZyme
Location: 363906 - 365846 (-)
Type: CAZyme
Location: 363906 - 365846 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.