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Cluster: ShaoY_2019_ERR3405931_bin.18_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_240 233755 234891 - GT28
pfam ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_241 235139 236635 + VanW | PG_binding_4
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_242 236824 237807 + GT2
pfam ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_243 237897 239849 + CN_hydrolase | NAD_synthase
pfam ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_244 239981 240262 + ComFB
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_245 240309 240752 + 9.A.11.1.1
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_246 240783 241793 + 9.A.11.1.1
pfam ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_247 241814 243346 - PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
NULL(UNKNOWN) ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_248 243625 243894 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_249 243952 244896 + 3.A.11.1.4
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_250 245023 246819 - GH2
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_251 246859 249477 - GH35
STP ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_252 249615 251219 - SBP_bac_1
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_253 251296 252210 - 3.A.1.1.29
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_254 252225 253190 - 3.A.1.1.10
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_240
Type: CAZyme
Location: 233755 - 234891 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_241
Type: pfam
Location: 235139 - 236635 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_242
Type: CAZyme
Location: 236824 - 237807 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_243
Type: pfam
Location: 237897 - 239849 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_244
Type: pfam
Location: 239981 - 240262 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_245
Type: TC
Location: 240309 - 240752 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_246
Type: TC
Location: 240783 - 241793 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_247
Type: pfam
Location: 241814 - 243346 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_248
Type:
Location: 243625 - 243894 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_249
Type: TC
Location: 243952 - 244896 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_250
Type: CAZyme
Location: 245023 - 246819 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_251
Type: CAZyme
Location: 246859 - 249477 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_252
Type: STP
Location: 249615 - 251219 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_253
Type: TC
Location: 251296 - 252210 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_254
Type: TC
Location: 252225 - 253190 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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