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Cluster: ShaoY_2019_ERR3405931_bin.18_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_21 23869 25428 - GH43_4
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_22 25455 26936 - GH51_1
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_23 26966 27841 - 3.A.1.1.20
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_24 27856 28797 - 3.A.1.1.20
STP ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_25 28922 30343 - SBP_bac_1
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_26 30798 32903 - 1.B.52.2.1
pfam ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_27 33108 33386 - DUF6171
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_28 33548 35743 - CBM20 | GH13_2
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_29 35800 37548 - CBM34 | GH13_20
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_30 37610 38902 - 3.A.1.1.6
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_31 38930 39754 - 3.A.1.1.6
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_32 39758 41089 - 3.A.1.1.6
TF ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_33 41194 42111 + LacI
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_34 42191 42880 - CBM26
peptidase ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_35 42947 43801 - C60.UPB
pfam ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_36 44183 44674 - PNPOx_N | Pyridox_ox_2
TC ShaoY_2019_ERR3405931_bin.18_k141_29049 ShaoY_2019_ERR3405931_bin.18_k141_29049_37 44715 45035 - 2.A.7.1.10
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_21
Type: CAZyme
Location: 23869 - 25428 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_22
Type: CAZyme
Location: 25455 - 26936 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_23
Type: TC
Location: 26966 - 27841 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_24
Type: TC
Location: 27856 - 28797 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_25
Type: STP
Location: 28922 - 30343 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_26
Type: TC
Location: 30798 - 32903 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_27
Type: pfam
Location: 33108 - 33386 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_28
Type: CAZyme
Location: 33548 - 35743 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_29
Type: CAZyme
Location: 35800 - 37548 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_30
Type: TC
Location: 37610 - 38902 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_31
Type: TC
Location: 38930 - 39754 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_32
Type: TC
Location: 39758 - 41089 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_33
Type: TF
Location: 41194 - 42111 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_34
Type: CAZyme
Location: 42191 - 42880 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_35
Type: peptidase
Location: 42947 - 43801 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_36
Type: pfam
Location: 44183 - 44674 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_29049_37
Type: TC
Location: 44715 - 45035 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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