Cluster: ShaoY_2019_ERR3405931_bin.18_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_236 | 229721 | 231607 | - | 9.B.34.1.3 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_237 | 231992 | 234436 | - | GH94 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_238 | 234917 | 235930 | + | LacI |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_239 | 235992 | 237449 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_240 | 237558 | 238511 | + | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_241 | 238508 | 239383 | + | 3.A.1.1.24 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_242 | 239675 | 240193 | - | Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_243 | 240299 | 241246 | - | 1.A.30.1.3 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_244 | 241263 | 242066 | - | 1.A.30.1.3 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_236
Type: TC
Location: 229721 - 231607 (-)
Type: TC
Location: 229721 - 231607 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_237
Type: CAZyme
Location: 231992 - 234436 (-)
Type: CAZyme
Location: 231992 - 234436 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_238
Type: TF
Location: 234917 - 235930 (+)
Type: TF
Location: 234917 - 235930 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_239
Type:
Location: 235992 - 237449 (+)
Type:
Location: 235992 - 237449 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_240
Type: TC
Location: 237558 - 238511 (+)
Type: TC
Location: 237558 - 238511 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_241
Type: TC
Location: 238508 - 239383 (+)
Type: TC
Location: 238508 - 239383 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_242
Type: pfam
Location: 239675 - 240193 (-)
Type: pfam
Location: 239675 - 240193 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_243
Type: TC
Location: 240299 - 241246 (-)
Type: TC
Location: 240299 - 241246 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_244
Type: TC
Location: 241263 - 242066 (-)
Type: TC
Location: 241263 - 242066 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.