Cluster: ShaoY_2019_ERR3405931_bin.18_CGC37
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- CGC Family ID: CGCFAM_00133
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_92 | 74307 | 76430 | - | GH3 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_93 | 76523 | 78013 | + | SBP_bac_1 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_94 | 78237 | 81335 | - | GH38 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_95 | 81332 | 82330 | - | GH130_2 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_96 | 82407 | 83900 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_97 | 83953 | 84897 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_98 | 84910 | 85854 | - | 3.A.1.1.10 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_99 | 86040 | 86798 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_100 | 86770 | 88563 | - | 8.A.59.2.1 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_26609 | ShaoY_2019_ERR3405931_bin.18_k141_26609_101 | 88797 | 90332 | - | GH39 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_92
Type: CAZyme
Location: 74307 - 76430 (-)
Type: CAZyme
Location: 74307 - 76430 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_93
Type: STP
Location: 76523 - 78013 (+)
Type: STP
Location: 76523 - 78013 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_94
Type: CAZyme
Location: 78237 - 81335 (-)
Type: CAZyme
Location: 78237 - 81335 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_95
Type: CAZyme
Location: 81332 - 82330 (-)
Type: CAZyme
Location: 81332 - 82330 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_96
Type: STP
Location: 82407 - 83900 (-)
Type: STP
Location: 82407 - 83900 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_97
Type: TC
Location: 83953 - 84897 (-)
Type: TC
Location: 83953 - 84897 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_98
Type: TC
Location: 84910 - 85854 (-)
Type: TC
Location: 84910 - 85854 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_99
Type: TF
Location: 86040 - 86798 (-)
Type: TF
Location: 86040 - 86798 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_100
Type: TC
Location: 86770 - 88563 (-)
Type: TC
Location: 86770 - 88563 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_26609_101
Type: CAZyme
Location: 88797 - 90332 (-)
Type: CAZyme
Location: 88797 - 90332 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.