Cluster: ShaoY_2019_ERR3405931_bin.18_CGC35

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	ShaoY_2019_ERR3405931_bin.18_k141_25271	ShaoY_2019_ERR3405931_bin.18_k141_25271_57	77119	78870	-	9.B.33.1.1
TF	ShaoY_2019_ERR3405931_bin.18_k141_25271	ShaoY_2019_ERR3405931_bin.18_k141_25271_58	78889	80418	-	HTH_AraC \| HTH_AraC
STP	ShaoY_2019_ERR3405931_bin.18_k141_25271	ShaoY_2019_ERR3405931_bin.18_k141_25271_59	80646	82355	+	SBP_bac_1
TC	ShaoY_2019_ERR3405931_bin.18_k141_25271	ShaoY_2019_ERR3405931_bin.18_k141_25271_60	82414	83346	+	3.A.1.1.9
TC	ShaoY_2019_ERR3405931_bin.18_k141_25271	ShaoY_2019_ERR3405931_bin.18_k141_25271_61	83364	84257	+	3.A.1.1.9
CAZyme	ShaoY_2019_ERR3405931_bin.18_k141_25271	ShaoY_2019_ERR3405931_bin.18_k141_25271_62	84306	85847	+	GH13_44

Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_57
Type: TC
Location: 77119 - 78870 (-)

Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_58
Type: TF
Location: 78889 - 80418 (-)

Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_59
Type: STP
Location: 80646 - 82355 (+)

Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_60
Type: TC
Location: 82414 - 83346 (+)

Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_61
Type: TC
Location: 83364 - 84257 (+)

Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_62
Type: CAZyme
Location: 84306 - 85847 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.