Cluster: ShaoY_2019_ERR3405931_bin.18_CGC34
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_30 | 33236 | 35404 | - | 9.A.8.1.6 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_31 | 35484 | 35705 | - | FeoA |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_32 | 35718 | 35930 | - | FeoA |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_33 | 36283 | 38229 | - | GH127 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_34 | 38728 | 39765 | + | LacI |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_35 | 39887 | 40765 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_36 | 40762 | 41757 | - | 3.A.1.1.12 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_37 | 41801 | 43228 | - | SBP_bac_1 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_38 | 43929 | 49403 | + | GH121 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_39 | 49520 | 54202 | - | GH85 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_40 | 54596 | 56326 | - | CBM34 | GH13_20 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_41 | 56345 | 57190 | - | 3.A.1.1.2 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_42 | 57187 | 58074 | - | 3.A.1.1.2 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_43 | 58169 | 59431 | - | 3.A.1.1.16 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_44 | 59627 | 60655 | + | LacI |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_45 | 60906 | 62480 | - | CBM91 | GH43_11 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_46 | 62509 | 63387 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_47 | 63401 | 64303 | - | 3.A.1.1.11 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_30
Type: TC
Location: 33236 - 35404 (-)
Type: TC
Location: 33236 - 35404 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_31
Type: STP
Location: 35484 - 35705 (-)
Type: STP
Location: 35484 - 35705 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_32
Type: STP
Location: 35718 - 35930 (-)
Type: STP
Location: 35718 - 35930 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_33
Type: CAZyme
Location: 36283 - 38229 (-)
Type: CAZyme
Location: 36283 - 38229 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_34
Type: TF
Location: 38728 - 39765 (+)
Type: TF
Location: 38728 - 39765 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_35
Type: TC
Location: 39887 - 40765 (-)
Type: TC
Location: 39887 - 40765 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_36
Type: TC
Location: 40762 - 41757 (-)
Type: TC
Location: 40762 - 41757 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_37
Type: STP
Location: 41801 - 43228 (-)
Type: STP
Location: 41801 - 43228 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_38
Type: CAZyme
Location: 43929 - 49403 (+)
Type: CAZyme
Location: 43929 - 49403 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_39
Type: CAZyme
Location: 49520 - 54202 (-)
Type: CAZyme
Location: 49520 - 54202 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_40
Type: CAZyme
Location: 54596 - 56326 (-)
Type: CAZyme
Location: 54596 - 56326 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_41
Type: TC
Location: 56345 - 57190 (-)
Type: TC
Location: 56345 - 57190 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_42
Type: TC
Location: 57187 - 58074 (-)
Type: TC
Location: 57187 - 58074 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_43
Type: TC
Location: 58169 - 59431 (-)
Type: TC
Location: 58169 - 59431 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_44
Type: TF
Location: 59627 - 60655 (+)
Type: TF
Location: 59627 - 60655 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_45
Type: CAZyme
Location: 60906 - 62480 (-)
Type: CAZyme
Location: 60906 - 62480 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_46
Type: TC
Location: 62509 - 63387 (-)
Type: TC
Location: 62509 - 63387 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_47
Type: TC
Location: 63401 - 64303 (-)
Type: TC
Location: 63401 - 64303 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.