Cluster: ShaoY_2019_ERR3405931_bin.18_CGC33
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_3 | 2131 | 3528 | + | 3.A.1.1.27 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_4 | 3528 | 4388 | + | 3.A.1.1.27 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_5 | 4415 | 6004 | + | GH13_36 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_6 | 6173 | 7693 | + | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_7 | 7680 | 9386 | + | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_8 | 9383 | 11059 | + | 3.A.1.1.9 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_9 | 11159 | 11311 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_10 | 11325 | 14057 | - | 3.A.3.4.1 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_11 | 14268 | 16934 | + | 3.A.3.4.1 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_12 | 16975 | 17493 | + | Trans_reg_C |
| peptidase | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_13 | 17607 | 18797 | - | M20.UPD |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_14 | 18915 | 19802 | - | 3.A.1.3.20 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_15 | 20318 | 21445 | + | Aminotran_1_2 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_16 | 21448 | 22269 | + | 3.A.1.3.20 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_25271 | ShaoY_2019_ERR3405931_bin.18_k141_25271_17 | 22257 | 23009 | + | 3.A.1.3.20 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_3
Type: TC
Location: 2131 - 3528 (+)
Type: TC
Location: 2131 - 3528 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_4
Type: TC
Location: 3528 - 4388 (+)
Type: TC
Location: 3528 - 4388 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_5
Type: CAZyme
Location: 4415 - 6004 (+)
Type: CAZyme
Location: 4415 - 6004 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_6
Type: TF
Location: 6173 - 7693 (+)
Type: TF
Location: 6173 - 7693 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_7
Type: TC
Location: 7680 - 9386 (+)
Type: TC
Location: 7680 - 9386 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_8
Type: TC
Location: 9383 - 11059 (+)
Type: TC
Location: 9383 - 11059 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_9
Type:
Location: 11159 - 11311 (-)
Type:
Location: 11159 - 11311 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_10
Type: TC
Location: 11325 - 14057 (-)
Type: TC
Location: 11325 - 14057 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_11
Type: TC
Location: 14268 - 16934 (+)
Type: TC
Location: 14268 - 16934 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_12
Type: TF
Location: 16975 - 17493 (+)
Type: TF
Location: 16975 - 17493 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_13
Type: peptidase
Location: 17607 - 18797 (-)
Type: peptidase
Location: 17607 - 18797 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_14
Type: TC
Location: 18915 - 19802 (-)
Type: TC
Location: 18915 - 19802 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_15
Type: STP
Location: 20318 - 21445 (+)
Type: STP
Location: 20318 - 21445 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_16
Type: TC
Location: 21448 - 22269 (+)
Type: TC
Location: 21448 - 22269 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_25271_17
Type: TC
Location: 22257 - 23009 (+)
Type: TC
Location: 22257 - 23009 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.