Cluster: ShaoY_2019_ERR3405931_bin.18_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_364 | 393842 | 395578 | + | 3.A.1.135.5 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_365 | 395575 | 397326 | + | 3.A.1.135.7 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_366 | 397476 | 398318 | + | Transketolase_N | E1_dh | XFP_N | DXP_synthase_N |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_367 | 398321 | 399265 | + | Transket_pyr | Transketolase_C | Transketolase_C_1 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_368 | 399340 | 400341 | - | GT2 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_369 | 400366 | 401631 | - | 9.A.40.2.4 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_370 | 401984 | 402796 | + | MerR |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_371 | 402853 | 403530 | + | 9.B.120.1.2 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_364
Type: TC
Location: 393842 - 395578 (+)
Type: TC
Location: 393842 - 395578 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_365
Type: TC
Location: 395575 - 397326 (+)
Type: TC
Location: 395575 - 397326 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_366
Type: pfam
Location: 397476 - 398318 (+)
Type: pfam
Location: 397476 - 398318 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_367
Type: pfam
Location: 398321 - 399265 (+)
Type: pfam
Location: 398321 - 399265 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_368
Type: CAZyme
Location: 399340 - 400341 (-)
Type: CAZyme
Location: 399340 - 400341 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_369
Type: TC
Location: 400366 - 401631 (-)
Type: TC
Location: 400366 - 401631 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_370
Type: TF
Location: 401984 - 402796 (+)
Type: TF
Location: 401984 - 402796 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_371
Type: TC
Location: 402853 - 403530 (+)
Type: TC
Location: 402853 - 403530 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.