Cluster: ShaoY_2019_ERR3405931_bin.18_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_289 | 322135 | 323865 | + | GH154 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_290 | 323871 | 325004 | + | GH88 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_291 | 325098 | 325883 | + | adh_short | KR | adh_short_C2 | SDR |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_292 | 325976 | 326809 | - | 3.A.1.29.1 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23762 | ShaoY_2019_ERR3405931_bin.18_k141_23762_293 | 326806 | 328533 | - | 3.A.1.29.1 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_289
Type: CAZyme
Location: 322135 - 323865 (+)
Type: CAZyme
Location: 322135 - 323865 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_290
Type: CAZyme
Location: 323871 - 325004 (+)
Type: CAZyme
Location: 323871 - 325004 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_291
Type: pfam
Location: 325098 - 325883 (+)
Type: pfam
Location: 325098 - 325883 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_292
Type: TC
Location: 325976 - 326809 (-)
Type: TC
Location: 325976 - 326809 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23762_293
Type: TC
Location: 326806 - 328533 (-)
Type: TC
Location: 326806 - 328533 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.