Cluster: ShaoY_2019_ERR3405931_bin.18_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_50 | 50804 | 52822 | - | GH42 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_51 | 52950 | 53123 | - | HTH_3 |
| sulfatase | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_52 | 53288 | 54040 | - | S1_9 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_53 | 54301 | 56052 | + | 3.A.1.135.7 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_54 | 56199 | 57986 | + | 3.A.1.135.7 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_55 | 58429 | 59445 | + | LacI |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_23610 | ShaoY_2019_ERR3405931_bin.18_k141_23610_56 | 59511 | 60185 | - | 9.B.143.2.3 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_50
Type: CAZyme
Location: 50804 - 52822 (-)
Type: CAZyme
Location: 50804 - 52822 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_51
Type: TF
Location: 52950 - 53123 (-)
Type: TF
Location: 52950 - 53123 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_52
Type: sulfatase
Location: 53288 - 54040 (-)
Type: sulfatase
Location: 53288 - 54040 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_53
Type: TC
Location: 54301 - 56052 (+)
Type: TC
Location: 54301 - 56052 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_54
Type: TC
Location: 56199 - 57986 (+)
Type: TC
Location: 56199 - 57986 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_55
Type: TF
Location: 58429 - 59445 (+)
Type: TF
Location: 58429 - 59445 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_23610_56
Type: TC
Location: 59511 - 60185 (-)
Type: TC
Location: 59511 - 60185 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.