Cluster: ShaoY_2019_ERR3405931_bin.18_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- CGC Family ID: CGCFAM_03580
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_16218 | ShaoY_2019_ERR3405931_bin.18_k141_16218_96 | 100862 | 101680 | - | 1.A.23.2.2 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_16218 | ShaoY_2019_ERR3405931_bin.18_k141_16218_97 | 101705 | 102922 | - | UPF0020 | TRM5-TYW2_MTfase | Cons_hypoth95 | MTS | PrmA | Methyltransf_11 | Methyltransf_15 | Methyltrans_SAM | Methyltransf_25 | Methyltransf_31 | PUA_3 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_16218 | ShaoY_2019_ERR3405931_bin.18_k141_16218_98 | 103186 | 103932 | + | CBM13 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405931_bin.18_k141_16218 | ShaoY_2019_ERR3405931_bin.18_k141_16218_99 | 104060 | 104245 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_16218 | ShaoY_2019_ERR3405931_bin.18_k141_16218_100 | 104302 | 106560 | - | NAGPA |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_16218 | ShaoY_2019_ERR3405931_bin.18_k141_16218_101 | 106727 | 107494 | - | GH23 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_16218_96
Type: TC
Location: 100862 - 101680 (-)
Type: TC
Location: 100862 - 101680 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_16218_97
Type: pfam
Location: 101705 - 102922 (-)
Type: pfam
Location: 101705 - 102922 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_16218_98
Type: CAZyme
Location: 103186 - 103932 (+)
Type: CAZyme
Location: 103186 - 103932 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_16218_99
Type:
Location: 104060 - 104245 (+)
Type:
Location: 104060 - 104245 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_16218_100
Type: pfam
Location: 104302 - 106560 (-)
Type: pfam
Location: 104302 - 106560 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_16218_101
Type: CAZyme
Location: 106727 - 107494 (-)
Type: CAZyme
Location: 106727 - 107494 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.