Cluster: ShaoY_2019_ERR3405931_bin.18_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_115 | 114762 | 116276 | - | CE20 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_116 | 116625 | 117140 | + | Acetyltransf_1 | Acetyltransf_3 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_117 | 117520 | 118545 | + | LacI |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_118 | 118862 | 120286 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_119 | 120449 | 121294 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_120 | 121294 | 122169 | + | 3.A.1.1.45 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_121 | 122219 | 123811 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_122 | 123835 | 126162 | + | GT35 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_123 | 126251 | 126598 | - | YjbR |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_124 | 126887 | 127894 | + | A_deaminase |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_12188 | ShaoY_2019_ERR3405931_bin.18_k141_12188_125 | 127904 | 128335 | - | 2.A.7.21.8 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_115
Type: CAZyme
Location: 114762 - 116276 (-)
Type: CAZyme
Location: 114762 - 116276 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_116
Type: pfam
Location: 116625 - 117140 (+)
Type: pfam
Location: 116625 - 117140 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_117
Type: TF
Location: 117520 - 118545 (+)
Type: TF
Location: 117520 - 118545 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_118
Type: TC
Location: 118862 - 120286 (+)
Type: TC
Location: 118862 - 120286 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_119
Type: TC
Location: 120449 - 121294 (+)
Type: TC
Location: 120449 - 121294 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_120
Type: TC
Location: 121294 - 122169 (+)
Type: TC
Location: 121294 - 122169 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_121
Type: CAZyme
Location: 122219 - 123811 (+)
Type: CAZyme
Location: 122219 - 123811 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_122
Type: CAZyme
Location: 123835 - 126162 (+)
Type: CAZyme
Location: 123835 - 126162 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_123
Type: pfam
Location: 126251 - 126598 (-)
Type: pfam
Location: 126251 - 126598 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_124
Type: pfam
Location: 126887 - 127894 (+)
Type: pfam
Location: 126887 - 127894 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_125
Type: TC
Location: 127904 - 128335 (-)
Type: TC
Location: 127904 - 128335 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.