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Cluster: ShaoY_2019_ERR3405931_bin.18_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_14 11992 13104 + CE4
NULL(UNKNOWN) ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_15 13162 13311 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_16 13345 14403 + 2.A.20.1.5
pfam ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_17 14473 15093 + PhoU_div
TC ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_18 15368 16855 + 2.A.66.1.26
pfam ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_19 16911 17531 - Hydrolase | HAD_2
NULL(UNKNOWN) ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_20 17586 18836 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_21 19168 21246 + 1.B.52.2.1
peptidase ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_22 21509 22273 - C60.002
pfam ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_23 22278 27737 - Collagen_bind | SpaA | SpaA | SpaA
TC ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_24 28289 30133 + 1.B.52.2.2
pfam ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_25 30331 31236 + NadA
TC ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_26 31277 32578 + 3.D.10.1.6
pfam ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_27 32575 33426 + QRPTase_C | QRPTase_N
CAZyme ShaoY_2019_ERR3405931_bin.18_k141_12188 ShaoY_2019_ERR3405931_bin.18_k141_12188_28 33558 34460 + GH25
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_14
Type: CAZyme
Location: 11992 - 13104 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_15
Type:
Location: 13162 - 13311 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_16
Type: TC
Location: 13345 - 14403 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_17
Type: pfam
Location: 14473 - 15093 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_18
Type: TC
Location: 15368 - 16855 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_19
Type: pfam
Location: 16911 - 17531 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_20
Type:
Location: 17586 - 18836 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_21
Type: TC
Location: 19168 - 21246 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_22
Type: peptidase
Location: 21509 - 22273 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_23
Type: pfam
Location: 22278 - 27737 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_24
Type: TC
Location: 28289 - 30133 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_25
Type: pfam
Location: 30331 - 31236 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_26
Type: TC
Location: 31277 - 32578 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_27
Type: pfam
Location: 32575 - 33426 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_12188_28
Type: CAZyme
Location: 33558 - 34460 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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