Cluster: ShaoY_2019_ERR3405931_bin.18_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_605 | 650286 | 652025 | - | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_606 | 652125 | 653003 | - | 3.A.1.1.41 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_607 | 653005 | 653907 | - | 3.A.1.1.25 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_608 | 654124 | 655506 | - | SBP_bac_1 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_609 | 655667 | 656995 | - | GH30_2 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_610 | 657183 | 657590 | + | HIRAN |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_611 | 657666 | 658409 | - | 3.A.1.17.13 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_612 | 658419 | 659483 | - | 3.A.1.17.8 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_613 | 659546 | 660337 | - | 3.A.1.17.8 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_605
Type: TC
Location: 650286 - 652025 (-)
Type: TC
Location: 650286 - 652025 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_606
Type: TC
Location: 652125 - 653003 (-)
Type: TC
Location: 652125 - 653003 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_607
Type: TC
Location: 653005 - 653907 (-)
Type: TC
Location: 653005 - 653907 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_608
Type: STP
Location: 654124 - 655506 (-)
Type: STP
Location: 654124 - 655506 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_609
Type: CAZyme
Location: 655667 - 656995 (-)
Type: CAZyme
Location: 655667 - 656995 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_610
Type: pfam
Location: 657183 - 657590 (+)
Type: pfam
Location: 657183 - 657590 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_611
Type: TC
Location: 657666 - 658409 (-)
Type: TC
Location: 657666 - 658409 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_612
Type: TC
Location: 658419 - 659483 (-)
Type: TC
Location: 658419 - 659483 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_613
Type: TC
Location: 659546 - 660337 (-)
Type: TC
Location: 659546 - 660337 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.