Cluster: ShaoY_2019_ERR3405931_bin.18_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_594 | 636529 | 637386 | - | 3.A.1.1.36 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_595 | 637390 | 638322 | - | 3.A.1.1.20 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_596 | 638453 | 639745 | - | 3.A.1.1.40 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_597 | 639835 | 641712 | - | GH20 |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_598 | 641998 | 642834 | - | HTH_6 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_599 | 643003 | 644295 | - | Metallophos |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_600 | 644607 | 645629 | + | 3.A.1.24.2 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_601 | 645626 | 646285 | + | 3.A.1.24.5 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_594
Type: TC
Location: 636529 - 637386 (-)
Type: TC
Location: 636529 - 637386 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_595
Type: TC
Location: 637390 - 638322 (-)
Type: TC
Location: 637390 - 638322 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_596
Type: TC
Location: 638453 - 639745 (-)
Type: TC
Location: 638453 - 639745 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_597
Type: CAZyme
Location: 639835 - 641712 (-)
Type: CAZyme
Location: 639835 - 641712 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_598
Type: TF
Location: 641998 - 642834 (-)
Type: TF
Location: 641998 - 642834 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_599
Type: pfam
Location: 643003 - 644295 (-)
Type: pfam
Location: 643003 - 644295 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_600
Type: TC
Location: 644607 - 645629 (+)
Type: TC
Location: 644607 - 645629 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_601
Type: TC
Location: 645626 - 646285 (+)
Type: TC
Location: 645626 - 646285 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.