Cluster: ShaoY_2019_ERR3405931_bin.18_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- CGC Family ID: CGCFAM_00204
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_581 | 620950 | 623571 | - | 3.A.3.2.21 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_582 | 623905 | 624603 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_583 | 624746 | 625120 | + | GntR |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_584 | 625124 | 625984 | + | 3.A.1.149.1 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_585 | 625981 | 626589 | + | ABC2_membrane_5 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_586 | 626627 | 627241 | + | ABC2_membrane_5 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_587 | 627331 | 629502 | - | GH3 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_588 | 629706 | 630158 | - | 1.E.26.6.3 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_581
Type: TC
Location: 620950 - 623571 (-)
Type: TC
Location: 620950 - 623571 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_582
Type:
Location: 623905 - 624603 (-)
Type:
Location: 623905 - 624603 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_583
Type: TF
Location: 624746 - 625120 (+)
Type: TF
Location: 624746 - 625120 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_584
Type: TC
Location: 625124 - 625984 (+)
Type: TC
Location: 625124 - 625984 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_585
Type: pfam
Location: 625981 - 626589 (+)
Type: pfam
Location: 625981 - 626589 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_586
Type: pfam
Location: 626627 - 627241 (+)
Type: pfam
Location: 626627 - 627241 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_587
Type: CAZyme
Location: 627331 - 629502 (-)
Type: CAZyme
Location: 627331 - 629502 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_588
Type: TC
Location: 629706 - 630158 (-)
Type: TC
Location: 629706 - 630158 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.