Cluster: ShaoY_2019_ERR3405931_bin.18_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405931_bin.18
- CGC Family ID: CGCFAM_04884
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_517 | 560572 | 561324 | - | 3.A.1.4.6 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_518 | 561723 | 563321 | - | CBM91 | GH43_11 |
| pfam | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_519 | 563333 | 564379 | - | ADH_zinc_N | ADH_N | ADH_zinc_N_2 | Glu_dehyd_C |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_520 | 564754 | 566880 | - | GH3 |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_521 | 567232 | 569232 | - | GH67 |
| STP | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_522 | 569534 | 571189 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_523 | 571267 | 572172 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_524 | 572186 | 573130 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_525 | 573320 | 573466 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_526 | 573576 | 575903 | + | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405931_bin.18_k141_6275 | ShaoY_2019_ERR3405931_bin.18_k141_6275_527 | 576032 | 577558 | + | CE20 |
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_517
Type: TC
Location: 560572 - 561324 (-)
Type: TC
Location: 560572 - 561324 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_518
Type: CAZyme
Location: 561723 - 563321 (-)
Type: CAZyme
Location: 561723 - 563321 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_519
Type: pfam
Location: 563333 - 564379 (-)
Type: pfam
Location: 563333 - 564379 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_520
Type: CAZyme
Location: 564754 - 566880 (-)
Type: CAZyme
Location: 564754 - 566880 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_521
Type: CAZyme
Location: 567232 - 569232 (-)
Type: CAZyme
Location: 567232 - 569232 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_522
Type: STP
Location: 569534 - 571189 (-)
Type: STP
Location: 569534 - 571189 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_523
Type: TC
Location: 571267 - 572172 (-)
Type: TC
Location: 571267 - 572172 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_524
Type: TC
Location: 572186 - 573130 (-)
Type: TC
Location: 572186 - 573130 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_525
Type:
Location: 573320 - 573466 (-)
Type:
Location: 573320 - 573466 (-)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_526
Type: TF
Location: 573576 - 575903 (+)
Type: TF
Location: 573576 - 575903 (+)
Gene ID: ShaoY_2019_ERR3405931_bin.18_k141_6275_527
Type: CAZyme
Location: 576032 - 577558 (+)
Type: CAZyme
Location: 576032 - 577558 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproicibacterium
Species
Caproicibacterium amylolyticum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.