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Cluster: ShaoY_2019_ERR3405922_bin.6_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405922_bin.6_k141_4775 ShaoY_2019_ERR3405922_bin.6_k141_4775_2 706 1545 - 3.A.1.1.47
TC ShaoY_2019_ERR3405922_bin.6_k141_4775 ShaoY_2019_ERR3405922_bin.6_k141_4775_3 1558 2454 - 3.A.1.1.20
STP ShaoY_2019_ERR3405922_bin.6_k141_4775 ShaoY_2019_ERR3405922_bin.6_k141_4775_4 2521 3867 - SBP_bac_1
CAZyme ShaoY_2019_ERR3405922_bin.6_k141_4775 ShaoY_2019_ERR3405922_bin.6_k141_4775_5 3886 5898 - GH151
TF ShaoY_2019_ERR3405922_bin.6_k141_4775 ShaoY_2019_ERR3405922_bin.6_k141_4775_6 6076 7572 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405922_bin.6_k141_4775 ShaoY_2019_ERR3405922_bin.6_k141_4775_7 7550 9358 - 9.B.33.1.1
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4775_2
Type: TC
Location: 706 - 1545 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4775_3
Type: TC
Location: 1558 - 2454 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4775_4
Type: STP
Location: 2521 - 3867 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4775_5
Type: CAZyme
Location: 3886 - 5898 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4775_6
Type: TF
Location: 6076 - 7572 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4775_7
Type: TC
Location: 7550 - 9358 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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