Cluster: ShaoY_2019_ERR3405922_bin.6_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_175 | 172647 | 174761 | - | GH13_11 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_176 | 174794 | 175417 | - | GerE |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_177 | 175421 | 176605 | - | HATPase_c | HisKA_3 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4649 | ShaoY_2019_ERR3405922_bin.6_k141_4649_178 | 176697 | 177626 | + | 3.A.1.105.9 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_175
Type: CAZyme
Location: 172647 - 174761 (-)
Type: CAZyme
Location: 172647 - 174761 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_176
Type: TF
Location: 174794 - 175417 (-)
Type: TF
Location: 174794 - 175417 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_177
Type: pfam
Location: 175421 - 176605 (-)
Type: pfam
Location: 175421 - 176605 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_178
Type: TC
Location: 176697 - 177626 (+)
Type: TC
Location: 176697 - 177626 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.