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Cluster: ShaoY_2019_ERR3405922_bin.6_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_58 55507 56001 + 3.D.1.5.1
STP ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_59 56005 56565 + HATPase_c
NULL(UNKNOWN) ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_60 56620 57000 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_61 57039 58826 + 3.D.1.5.1
STP ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_62 58842 60584 + Fer4
CAZyme ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_63 61109 62032 - CE4
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_58
Type: TC
Location: 55507 - 56001 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_59
Type: STP
Location: 56005 - 56565 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_60
Type:
Location: 56620 - 57000 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_61
Type: TC
Location: 57039 - 58826 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_62
Type: STP
Location: 58842 - 60584 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_63
Type: CAZyme
Location: 61109 - 62032 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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