Cluster: ShaoY_2019_ERR3405922_bin.6_CGC39
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_00117
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_26024 | ShaoY_2019_ERR3405922_bin.6_k141_26024_1 | 3 | 1163 | - | GH13_14 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_26024 | ShaoY_2019_ERR3405922_bin.6_k141_26024_2 | 1306 | 2178 | - | 3.A.1.1.27 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_26024 | ShaoY_2019_ERR3405922_bin.6_k141_26024_3 | 2181 | 3560 | - | 3.A.1.1.27 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_26024 | ShaoY_2019_ERR3405922_bin.6_k141_26024_4 | 3577 | 4812 | - | 3.A.1.1.2 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_26024_1
Type: CAZyme
Location: 3 - 1163 (-)
Type: CAZyme
Location: 3 - 1163 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_26024_2
Type: TC
Location: 1306 - 2178 (-)
Type: TC
Location: 1306 - 2178 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_26024_3
Type: TC
Location: 2181 - 3560 (-)
Type: TC
Location: 2181 - 3560 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_26024_4
Type: TC
Location: 3577 - 4812 (-)
Type: TC
Location: 3577 - 4812 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.