Cluster: ShaoY_2019_ERR3405922_bin.6_CGC33
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_01634
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_27 | 35129 | 36565 | + | GH1 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_28 | 36546 | 37532 | + | ROK |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_29 | 37529 | 37642 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_30 | 37667 | 39208 | + | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_31 | 39214 | 40251 | + | 3.A.1.2.14 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_32 | 40270 | 41886 | + | HTH_AraC | HTH_AraC |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_33 | 41889 | 42971 | - | GntR |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_34 | 43386 | 44399 | + | 3.A.1.2.1 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_35 | 44522 | 46039 | + | 3.A.1.2.23 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_36 | 46039 | 47130 | + | 3.A.1.2.14 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_37 | 47132 | 48181 | + | 3.A.1.2.14 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_38 | 48356 | 48670 | + | rhaM |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_39 | 49052 | 49783 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_20667 | ShaoY_2019_ERR3405922_bin.6_k141_20667_40 | 49935 | 50708 | + | GH73 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_27
Type: CAZyme
Location: 35129 - 36565 (+)
Type: CAZyme
Location: 35129 - 36565 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_28
Type: pfam
Location: 36546 - 37532 (+)
Type: pfam
Location: 36546 - 37532 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_29
Type:
Location: 37529 - 37642 (+)
Type:
Location: 37529 - 37642 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_30
Type: TC
Location: 37667 - 39208 (+)
Type: TC
Location: 37667 - 39208 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_31
Type: TC
Location: 39214 - 40251 (+)
Type: TC
Location: 39214 - 40251 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_32
Type: TF
Location: 40270 - 41886 (+)
Type: TF
Location: 40270 - 41886 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_33
Type: TF
Location: 41889 - 42971 (-)
Type: TF
Location: 41889 - 42971 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_34
Type: TC
Location: 43386 - 44399 (+)
Type: TC
Location: 43386 - 44399 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_35
Type: TC
Location: 44522 - 46039 (+)
Type: TC
Location: 44522 - 46039 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_36
Type: TC
Location: 46039 - 47130 (+)
Type: TC
Location: 46039 - 47130 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_37
Type: TC
Location: 47132 - 48181 (+)
Type: TC
Location: 47132 - 48181 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_38
Type: pfam
Location: 48356 - 48670 (+)
Type: pfam
Location: 48356 - 48670 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_39
Type:
Location: 49052 - 49783 (+)
Type:
Location: 49052 - 49783 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_20667_40
Type: CAZyme
Location: 49935 - 50708 (+)
Type: CAZyme
Location: 49935 - 50708 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.